Advance your research. Understand NGS and analyze sequenced data yourself.
May 10-12, 2023
The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. The participants will be trained on understanding their own NGS data, finding potential problems/errors therein and finally perform their first downstream analysis (variant calling). In the course we will use a real-life NGS dataset from the current market leader illumina.
All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.
Check our new course layout.
Our trainers have a proven record of academic and/or industrial experience in NGS data analysis. Because up-to-date expert knowledge is needed to answer your questions and know what is important in the field.
We only use open source tools that are free to use. We try to showcase and compare different tools (e.g. NGS mappers), since not every software fits with every task/question.
For a optimal learning experience we carefully prepare our learning materials and example data. All materials, tools and results created during the course are for take home with you.
This workshop has been redesigned and adapted to the needs of beginners in the field of NGS bioinformatics and comprises this three course modules:
Dr. David Langenberger (ecSeq Bioinformatics GmbH)
David started working with small non-coding RNAs in 2006. Since 2009 he uses NGS technologies to investigate these short regulatory RNAs as well as other targets. He has been part of several large NGS projects, for example the International Cancer Genome Consortium (ICGC).
Dr. Mario Fasold (ecSeq Bioinformatics GmbH)
Mario works in the analysis of microarray data since 2007 and developed several bioinformatics tools such as the Bioconductor package AffyRNADegradation and the Larpack program package. Since 2011 he specialized in the field of NGS data analysis and helped analysing sequencing data of several large consortium projects.
The target audience is biologists or data analysts with no or little experience in analyzing NGS data. A fundamental understanding of molecular biology (DNA, RNA, gene expression, PCR, ...) is assumed.
A basic knowledge of Linux & Bioinformatics (commandline usage, common commands and tools) is beneficial, but not required.
Location: cmt GmbH, Hansastraße 32, 80686 München, Germany
Available seats: 20 (first-come, first-served)
Registration Fee: 1049 EUR (excluding VAT)
Travel expenses and accommodation are not covered by the registration fee.
Opening Date of Registration: November 1, 2022
Closing Date of Registration: May 1, 2023
Workshop: May 10-12, 2023 (9 am - 5 pm)
"The training was very good, useful and accessible. The team really took the time to guide us through the different steps of NGS analysis. The effort made to make this training understandable for people with limited IT skills was very appreciated. Trainers explained well the different principle and analysis tools. Overall the training gives a very nice introduction to start NGS analysis on its own." Romain Ollier, AC Immune, Switzerland
"The workshop was very useful, catering well to the intended audience. It was definitely a great introduction to NGS methods and data analysis, laying a good foundation for further learning and helped me get understanding on some things I was stuck with during my data analysis. The teachers were helpful with a sense of humor as well :)" Helka Kaunisto, Tampere University, Finland
"This course was an excellent introduction to the biology and computational fundamentals needed to work with NGS data. I learned so much in 3 days and now feel confident to start working with the NGS data I've produced!" Michelle Hung, Senti Biosciences, USA
When you register for this workshop you are agreeing with our Workshop Terms and Conditions. Please read them before you register.
ecSeq Bioinformatics GmbH